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Unraveling the Potential of CRISPR Technology in the Gene-editing Space

Unraveling the Potential of CRISPR Technology in the Gene-editing Space

Jun 10, 2022

CRISPR technology or CRISPR/Cas9 technology is a genome-editing tool derived from the bacterial defense system against viruses and plasmids. The system comprises the Cas9 nuclease enzyme to create site-directed dsDNA (double-stranded DNA) break and a guide RNA, which is a predesigned 20 bp long RNA sequence within a more extended RNA scaffold. This sequence guides the Cas9 enzyme to the target sequence to cut across both DNA strands. The CRISPR system varies among bacterial species depending on the structure and function. Presently, the system is mainly categorized into two classes (I and II) and six types (I–VI). Class I represents 90% of the CRISPR systems and includes types I, II, and IV, whereas Class II represent only 10% with types II, V, and VI. The former class is found in both bacteria and archaea; however, the latter is found only in bacteria. Due to the simplicity and efficiency of the CRISPR system, the tool is preferred more than the other existing gene-editing technologies. 

This technology has been extensively used by countries such as the United States and Canada, making the North American region one of the leading markets for CRISPR technology. As per the 2019 data released by the American Association for the Advancement of Science, the world’s largest general scientific society, the US was the leading country to file patent applications for distinct inventions that involved CRISPR in 2018. The presence of most of the key CRISPR technology-based companies in the US also contributes to the market. Moreover, strategic business activities such as mergers, acquisitions, licensing agreements, and others by the developer of various CRISPR technology-based products are also bolstering the regional CRISPR technology market. For instance, on October 12, 2020, Merck signed agreements licensing its CRISPR technology to two companies — PanCELLa, a cell therapy firm based in Toronto, Canada, and Takara Bio USA, Inc., a biotechnology company based in Mountain View, California, US.

Evolution of CRISPR Technology 

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) technology was first identified in E.coli by a Japanese scientist Ishino and his colleagues in 1987. Six years later, Mojica and Van Soolingen found similar DNA fragments in archaea (Haloarcula and Haloferax) and M. tuberculosis separately. In addition, by 2000, Mojica’s group also identified CRISPR DNA sequences in twenty microbial species. Following the identification of genes adjacent to the CRISPR locus in 2002 and foreign viral DNA sequences in CRISPR spacers in 2005, the system’s main function was proven in 2007. Several clinical CRISPR technology applications have recently been reported.

evolution of CRISPR Technology
Developmental Roadmap of CRISPR Technology

Few Important CRISPR Technology Applications

Agriculture

CRISPR technology has massive potential in agriculture and crop improvement. Various scientists use the CRISPR-Cas9 systems’ recognition of specific DNA sequences and apply it in the development of improved crops with high yield, improved shelf life, and others. Furthermore, the scientists have shifted their focus on CRISPR technology to modify the staple crops to make them tolerant to the changing environment and help to combat the growing concern of food security. For instance, in September 2021, Sanatech Seed, a Japanese start-up, released the first CRISPR-edited, GABA enriched tomatoes in Japan, which have five times the normal amount of the nutrient GABA compared to normal tomatoes.

Development of targeted medicines and treatments

The CRISPR/Cas9 technology can revolutionize the development of drugs for a wide range of genetic disorders, including blood disorders and neurodegenerative disorders, among others. This technology has been extensively used in research for developing cancer medications. For instance, a Chinese healthcare company, Chengdu MedGenCell, Co., Ltd., in collaboration with Sichuan University, initiated a clinical trial to study CRISPR-Cas9 PD-1-edited T cells for treating patients with advanced non-small-cell lung cancer in 2016. The Phase I study was completed in 2020. The study’s primary endpoints were safety and feasibility, and the secondary endpoint was efficacy. As per the data released in April 2020, all the prespecified endpoints were met.

Diagnostics

CRISPR technology-based diagnostics have been extensively used for many biomedical applications. The technology, in particular, can effectively sense the nucleic-acid-base biomarkers for infectious and non-infectious diseases. In addition, it can also be used to detect deletions and mutations of indicative genetic disorders. One such instance was when in May 2020, Sherlock Biosciences received FDA Emergency Use Authorization for CRISPR SARS-CoV-2 rapid diagnostic.

Bioenergy

Bioenergy is a leading alternative to fossil fuels, and scientists have recently made some significant advances in the field of biofuel production by utilizing CRISPR technology. For instance, in 2017, ExxonMobil, along with Synthetic Genomics, used CRISPR gene-editing technology to produce an algal strain that could pave the way to a low-carbon fuel and a sustainable future, thereby reducing the risk of climate change.

Factors Bolstering the CRISPR Technology Market

  • The increase in government and private association funding to push the research and development in the field of CRISPR technology is one of the prominent factors responsible for augmenting the market for CRISPR technology in the upcoming years. For example, on September 09, 2021, Mammoth Biosciences, a biotech company developing next-generation CRISPR products to cure and detect disease, secured USD 195 million. The company anticipated using the funds to broaden its toolkit of next-generation CRISPR systems.
  • Furthermore, government initiatives to provide a conducive environment for developing products by utilizing CRISPR technology-based platforms will likely propel the global CRISPR technology market. One such example was when Health Canada in 2021 proposed new guidance for the Novel Foods Regulation focused on plant breeding and declared that gene-editing technologies such as CRISPR technology and products obtained after gene editing are safe.
  • Moreover, the urgent need to diagnose and screen for COVID-19 infection has strengthened the market for CRISPR-based diagnostic products. This is because CRISPR-based diagnostic kits offer advantages such as high precision and sensitivity, rapid detection, no requirement of special laboratory equipment, and portability. For instance, on September 19, 2020, FELUDA, the Tata CRISPR, and CSIR-IGIB (Institute of Genomics and Integrative Biology) test received regulatory approval from the Drug Controller General of India (DCGI) for commercial launch in India. The FELUDA test uses CRISPR technology for the detection of the COVID-19 virus.
  • In addition, a wide area of application of the CRISPR technology is likely to increase the adoption of the products based on the technology, thereby propelling the market in the forthcoming years. For example, in June 2021, QIAGEN launched CRISPR products (QIAprep&amp CRISPR Kit and CRISPR Q-Primer Solutions) for rapid and simplified analysis of gene-editing experiments. Thus, all the above-stated factors and others are expected to contribute to the CRISPR technology market in the coming years.

Prominent Players in the CRISPR Technology Market

Some of the CRISPR technology companies that are currently dominating the market include:

CRISPR Technology companies
Leading Players Dominating the CRISPR Technology Market

Thermo Fisher Scientific Inc. – Massachusetts, United States

Thermo Fisher Scientific is an American supplier of scientific instrumentation, reagents and consumables, and software services. Based in Waltham, Massachusetts, Thermo Fisher was formed through the merger of Thermo Electron and Fisher Scientific in 2006. The company has developed various tools and solutions for every CRISPR genome editing workflow step. Some of the CRISPR products are as follows:

Product Name

Product Description

TrueCut Cas9 Protein

The company’s latest Cas9 protein has been designed for clinical research under high stringency manufacturing and extensive safety testing

LentiArray CRISPR Libraries

Arrayed CRISPR libraries are designed and constructed to provide a flexible system that does not impose limitations on the assay design or research goals

LentiPool CRISPR Libraries

LentiPool CRISPR libraries are an affordable method to screen a large number of genes, as there is no high-throughput instrumentation required

LentiArray CRISPR gRNA

Predesigned, prepackaged CRISPR gRNA lentiviruses designed for efficient gene knockout

LentiArray Cas9 Lentivirus

Cas9 Lentivirus gives the ability to create a stable pool of Cas9-expressing cells or to isolate stable Cas9-expressing clones.

Agilent Technologies Inc. – California, United States

Agilent Technologies Inc. is a global leader in life sciences, diagnostics, and applied chemical markets, providing application-focused solutions that include instruments, software, services, and consumables for the entire laboratory workflow. The company is headquartered in California in the US and delivers its high-quality solutions across 110 countries. Agilent focuses its expertise on six key markets: food, environmental and forensics, pharmaceutical, diagnostics, chemical energy, and research. Some of the CRISPR products developed by the company are as follows:

Product Name

Product Description

CRISPR SureGuide Chemically Synthesized sgRNA

  • Custom sequences up to 140 nt, longer lengths available upon request
  • Quantities from 100 µg to 100 mg (3–3,000 nmol) to scale the experiment
  • Research and Development grade to GMP material
  • Chemical modifications at no extra charge (M or MS at 5’ and 3’ ends)
  • Additional modifications and longer lengths are available upon request, ensuring the flexibility you need
  • Customizable gRNA sequences using easy-to-use CRISPR Design software

SureGuide Human CRISPR Activation & Interference Libraries

  • It provides linear PCR amplicons optimized to serve as templates for CRISPR gRNA synthesis to silence over 18,000 human genes in CRISPR interference experiments

SureGuide Cas9 Nuclease Kits

  • The Cas9 nuclease kit is part of an integrated solution for in vitro CRISPR-associated protein 9 research
  • The kit is used for in vitro cloning of large genes or DNA fragments without the limitations imposed by common restriction enzymes or PCR fidelity

Synthego – California, United States

Synthego is a privately held genome editing company located in the US. The company accelerates research and development to improve human health by leveraging machine learning, automation, and gene editing to develop various CRISPR-based tools. The company is at the forefront of innovation, enabling the next generation of medicines by delivering genome editing at an unprecedented scale. Some of the CRISPR-based products developed by the company are as follows:

Product Name

Product Description

Synthetic sgRNA Kit

  • Synthego sgRNAs are highly pure guides that deliver indel frequencies of up to 99%, making it easy to efficiently conduct knockout or knock-ins in virtually any cell type.
  • sgRNA is available at any scale of 1.5–500 nmol
  • Powered by Synthego’s proprietary Halo platform

Gene Knockout Kit v2

  • The Gene Knockout Kit v2 utilizes a proprietary multi-guide strategy that consists of up to three spatially coordinated modified sgRNAs that induce fragment deletion

Arrayed CRISPR Screening Libraries

  • Synthego’s Arrayed CRISPR Screening Libraries comprise of sgRNAs targeting one gene per well in a multiwell plate format
  • Synthego’s libraries are also ready-to-transfect, either complexed into RNPs or directly into a Cas9-expressing cell line avoiding long prep protocols
  • Available in custom, predesigned, and whole human/mouse genome gene sets

Mammoth Biosciences, Inc. – California, United States

Founded in 2017, Mammoth Biosciences, Inc. is located in California, United States, and developing the next generation of CRISPR products. The company is leveraging its platform to address the challenges across healthcare, agriculture, environmental monitoring, biodefense, and more. Some of the CRISPR technology-based products of the company are as follows:

Product Name

Product Description

The CRISPR-based detection platform (DETECTR®)

  • The platform is a proprietary testing system that works by employing CRISPR nucleases, programmed to find a defined gene sequence
  • The company’s CRISPR-powered diagnostics provide unambiguous results in an instrument-free and disposable format
  • The platform is fast and provides results within 20 min. Moreover, it is compatible with multiple sample matrices
  • It can be quickly tailored to identify any DNA or RNA target using the company’s CRISPR nuclease toolbox and gRNA design pipeline

DETECTR BOOST® SARS-CoV-2 Reagent Kit*

  • A workstation to run a CRISPR-based SARS-CoV-2 molecular assay based on automated liquid handling equipment
  • This high throughput system can perform thousands of tests per day with minimal user interaction

Cellecta, Inc. – California, United States

Founded in 2006, Cellecta, Inc. is a private company located in Mountain View, California. The company is predominantly focused on developing advanced high-throughput (HT) genetic screening technologies to discover and characterize novel therapeutic targets and drugs. The genetic screening portfolio of the company includes shRNA and CRISPR screening services, custom and off-the-shelf pooled libraries, and knockout/knockdown cell lines that facilitate genome-wide functional screening and the identification and validation of genes involved in critical biological and disease pathways.

Product Name

Product Description

CloneTracker™ XP

  • Human sgRNA libraries incorporating clonal barcodes adjacent to the gRNA sequences
  • The library is designed for CRISP-Seq (aka Perturb-Seq) screens. In cells transduced with these libraries, researchers can detect both the clonal barcodes and the sgRNA effector with RNA Sequencing so that changes in gene expression can be correlated with specific disruptions of particular genes
  • There are 20 sgRNAs to each gene designed to target functional domains
  • Cellecta currently offers two CloneTracker XP CRISPR Knockout libraries, one targeting 27 human anticancer genes and one targeting the 27 corresponding mouse homologs

CRISPR Human Genome 80K Knockout Libraries

  • Single library with ~80,000 constructs targeting approximately 19,000 protein-coding genes
  • Each gene is targeted by 4 sgRNAs designed based on Doench et al. (n.d.) criteria
  • All human protein-coding genes coverage – over 19,000 gene targets
  • This library can be obtained with either RFP and Puro OR Puro only markers

CRISPR Dual-sgRNA Non-Targeting Control Construct (no Cas9)

  • This dual-sgRNA construct expresses two different, non-target sgRNAs. The design is the same as our dual-sgRNA libraries in the pRSL10-mU6-sgNT1-hU6-sgNT2-UbiC-TagRFP vector
  • With alternative and shorter PAM (protospacer adjacent motif) requirements, newly discovered nucleases can direct edits to an expanded set of DNA sequences

Recent Developments in the CRISPR Technology Market

  • In February 2022, Intellia Therapeutics, Inc. and Regeneron Pharmaceuticals, Inc. declared updated Phase I data demonstrating a single dose of NTLA-2001, investigational CRISPR therapy for transthyretin (ATTR) amyloidosis, resulted in a rapid, deep and sustained reduction in disease-causing protein.
  • In October 2021, Merck’s Life Science business sector signed an agreement licensing its patented CRISPR-Cas9 technology to Cellecta, Inc. Through the licensing of its innovative technology, Merck is paving the path for researchers and scientists to identify and accelerate next-generation treatments
  • In April 2021, CRISPR Therapeutics (a leading gene-editing company focused on developing transformative gene-based medicines for serious diseases using its proprietary CRISPR/Cas9 platform) and Vertex announced the European Medicines Agency (EMA) grant of Priority Medicines (PRIME) Designation to CTX001 for the treatment of TDT (transfusion-dependent beta-thalassemia). CTX001 was granted PRIME designation for treating SCD (severe sickle cell disease) in 2020.
  • In January 2021, Mammoth Biosciences partnered with Agilent to deliver CRISPR-based coronavirus tests.

Conclusion

CRISPR technology is blooming in the gene-editing field, and the current market for this technology is highly competitive as it comprises many key CRISPR technology companies. As per DelveInsight’s assumption, the global CRISPR technology market to grow significantly during the forecast period because of the various advantages associated with the technology, which enables easy and simplified gene editing compared to other available methods. Moreover, there is a rise in the adoption of CRISPR technology among researchers as the platform allows scientists to modify cell and animal models swiftly, thus accelerating the pace of research for any diseases such as cancer, hematological disorders, and neurodegenerative disorders. Furthermore, the use of this technology for diagnostic purposes in medical fields apart from treatment is another factor that might raise the adoption of CRISPR technology-based diagnostic tools, thereby augmenting the market growth.

Additionally, growing initiatives by the government and various foundations to support CRISPR-based research to improve the treatment of various disorders are also projected to bolster the market for this technology. For example, in November 2020, Intellia Therapeutics, a company developing medicines using CRISPR gene-editing technology, received a grant from the Bill & Melinda Gates Foundation to research in vivo sickle cell disease (SCD) treatments using its CRISPR/Cas9 genome editing technology. The above developmental program is a part of the Gates Foundation’s broader initiative to speed up the development of safe, effective, and durable gene-based cures in developing countries within the next 7–10 years. Therefore, along with such initiatives, and the rising prevalence of various diseases, the developing countries are likely to provide money-making opportunities for companies working with the CRISPR technology.

CRISPR Therapies Pipeline Analysis

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